Knaupp Group publications
Selected highlight publications
1. Larcombe, M.R., Hsu, S., Polo, J.M., Knaupp, A.S.*, 2022. Indirect Mechanisms of Transcription Factor-Mediated Gene Regulation during Cell Fate Changes. Advanced Genetics (Hoboken) 3, 2200015. * Corresponding author.
2. Knaupp, A.S.*, Schittenhelm, R.B., Polo, J.M., 2022. Characterization of Mammalian Regulatory Complexes at Single-Locus Resolution Using TINC. Chromatin: Methods and Protocols 2458, 175–193. * Corresponding author.
3. Knaupp, A.S., Mohenska, M., Larcombe, M.R., Ford, E., Lim, S.M., Wong, K., Chen, J., Firas, J., Huang, C., Liu, X., Nguyen, T., Sun, Y.B.Y., Holmes, M.L., Tripathi, P., Pflueger, J., Rossello, F.J., Schröder, J., Davidson, K.C., Nefzger, C.M., Das, P.P., Haigh, J.J., Lister, R., Schittenhelm, R.B., Polo, J.M., 2020. TINC- A Method to Dissect Regulatory Complexes at Single-Locus Resolution- Reveals an Extensive Protein Complex at the Nanog Promoter. Stem Cell Reports 15, 1246–1259.
4. Liu, X., Ouyang, J.F., Rossello, F.J., Tan, J.P., Davidson, K.C., Valdes, D.S., Schröder, J., Sun, Y.B.Y., Chen, J., Knaupp, A.S., Sun, G., Chy, H.S., Huang, Z., Pflueger, J., Firas, J., Tano, V., Buckberry, S., Paynter, J.M., Larcombe, M.R., Poppe, D., Choo, X.Y., O’Brien, C.M., Pastor, W.A., Chen, D., Leichter, A.L., Naeem, H., Tripathi, P., Das, P.P., Grubman, A., Powell, D.R., Laslett, A.L., David, L., Nilsson, S.K., Clark, A.T., Lister, R., Nefzger, C.M., Martelotto, L.G., Rackham, O.J.L., Polo, J.M., 2020. Reprogramming roadmap reveals route to human induced trophoblast stem cells. Nature 586, 101–107.
5. Knaupp, A.S., Buckberry, S., Pflueger, J., Lim, S.M., Ford, E., Larcombe, M.R., Rossello, F.J., de Mendoza, A., Alaei, S., Firas, J., Holmes, M.L., Nair, S.S., Clark, S.J., Nefzger, C.M., Lister, R., Polo, J.M., 2017. Transient and Permanent Reconfiguration of Chromatin and Transcription Factor Occupancy Drive Reprogramming. Cell Stem Cell 21, 834–845.e6.
6. Liu, X., Nefzger, C.M., Rossello, F.J., Chen, J., Knaupp, A.S., Firas, J., Ford, E., Pflueger, J., Paynter, J.M., Chy, H.S., O’Brien, C.M., Huang, C., Mishra, K., Hodgson-Garms, M., Jansz, N., Williams, S.M., Blewitt, M.E., Nilsson, S.K., Schittenhelm, R.B., Laslett, A.L., Lister, R., Polo, J.M., 2017. Comprehensive characterization of distinct states of human naive pluripotency generated by reprogramming. Nature Methods 14, 1055–1062.
7. Alaei, S., Knaupp, A.S.*, Lim, S.M., Chen, J., Holmes, M.L., Änkö, M.L., Nefzger, C.M., Polo, J.M., 2016. An improved reprogrammable mouse model harbouring the reverse tetracycline-controlled transcriptional transactivator 3. Stem Cell Research 17, 49–53. * Co-first author.
8. Rackham, O.J.L., Firas, J., Fang, H., Oates, M.E., Holmes, M.L., Knaupp, A.S., FANTOM Consortium, Suzuki, H., Nefzger, C.M., Daub, C.O., Shin, J.W., Petretto, E., Forrest, A.R.R., Hayashizaki, Y., Polo, J.M., Gough, J., 2016. A predictive computational framework for direct reprogramming between human cell types. Nature Genetics 48, 331–335.
Additional publications
A full list of Knaupp Group publications can be viewed on PubMed.