Shi Laboratory
Monash Biomedicine Discovery Institute

Shi Lab publications

Selected highlight publications

  1. Liao Y, Raghu D, Pal B, Mielke LA and Shi W (2023). cellCounts: an R function for quantifying 10x Chromium single-cell RNA sequencing data. Bioinformatics, 39(7):btad439
  2. Chisanga D, Liao Y and Shi W (2022). Impact of gene annotation choice on the quantification of RNA-seq data. BMC Bioinformatics, 23(1):107
  3. Liao Y, Smyth GK and Shi W (2019). The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads. Nucleic Acids Research, 47(8):e47
  4. Liao Y, Smyth GK and Shi W (2014). featureCounts: an efficient general-purpose program for assigning sequence reads to genomic features. Bioinformatics, 30(7):923-30
  5. Liao Y, Smyth GK and Shi W (2013). The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote. Nucleic Acids Research, 41(10):e108
  6. Shi W*, Oshlack A, Smyth GK* (2010). Optimizing the noise versus bias trade-off for Illumina Whole Genome Expression BeadChips. Nucleic Acids Research, 38(22):e204 (*co-corresponding authors)

Additional publications

A full list of Shi Lab publications can be viewed on Google Scholar.