Publications

Highlights

Anyone interested in how to map and model brain networks can check out Alex’s textbook, Fundamentals of Brain Network Analysis, co-authored with Andrew Zalesky and Edward Bullmore.

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Selected publications

Deco, G*., Kringelbach, M*., Arnatkeviciute, A., Oldham, S., Sabaroedin, K., Rogasch, N. R., Aquno, K. M.#, Fornito, A.# (2021). Dynamical consequences of regional heterogeneity in the brain’s transcriptional landscape. Science Advances, 7: eabf4752.
*# Equal author contributions
https://advances.sciencemag.org/content/7/29/eabf4752

Chopra, S., Francey, S. M., O’Donoghue, B., Sabaroedin, K., Arnatkeviciute, A., Cropley, V., Nelson, B., Graham, J., Baldwin, L., Tahtalian, S., Yuen, H. P., Allott, K., Alvarez-Jimenez, M., Harrigan, S. L., Pantelis, C., Wood, S. J., McGorry, P., Fornito, A. (2021). Longitudinal changes in functional connectivity in antipsychotic-treated and antipsychotic-naïve first episode psychosis patients with low-risk of self-harm or aggression: A secondary analysis of a randomized clinical trial. JAMA Psychiatry, e211422.
https://jamanetwork.com/journals/jamapsychiatry/fullarticle/2781373

Arnatkeviciute, A., Fulcher, B. D., Oldham, S., Tiego, J., Paquola, C., Gerring, Z., Aquino, K., Hawi, Z., Johnson, B., Ball, G., Klein, M., Deco, G., Franke, B., Bellgrove, M., Fornito, A. (2021). Genetic influences on hub connectivity of the human connectome. Nature Communications, 12:4237.
https://www.nature.com/articles/s41467-021-24306-2

Fulcher, B. D., Arnatkeviciute, A., Fornito, A. (2021). Overcoming false-positive gene-category enrichment in the analysis of spatially resolved transcriptomic brain atlas data. Nature Communications, 12:2669.

Oldham, S., Arnatkeviciute, A., Smith, R. E., Jeggan, T., Bellgrove, M. A., Fornito, A. (2020). The efficacy of different preprocessing steps in reducing motion-related confounds in diffusion MRI connectomics. NeuroImage, 117252.
https://www.sciencedirect.com/science/article/pii/S1053811920307382

Aquino, K. M., Fulcher, B. D., Parkes, L., Sabaroedin, K., Fornito, A. (2020). Identifying and removing widespread signal deflections from fMRI data: Rethinking the global signal regression problem. NeuroImage, 212: 116614.
https://www.sciencedirect.com/science/article/pii/S1053811920301014

Arnatkeviciute, A., Fulcher, B., Fornito, A. (2019). A practical guide to linking brain-wide gene expression and neuroimaging data. NeuroImage, 189: 353-367.
https://www.sciencedirect.com/science/article/abs/pii/S1053811919300114

Fornito, A., Arnatkevicuite, A., Fulcher, B. D. (2019). Bridging the gap between the brain’s transcriptome and connectome. Trends in Cognitive Sciences, 23(1): 34-50.
https://www.sciencedirect.com/science/article/abs/pii/S1364661318302535

Sabaroedin, K., Tiego, J., Parkes, L., Sforazzini, F., Finlay, A., Johnson, B., Pinar, A., Cropley, V., Harrison, B. J., Zalesky, A., Pantelis, C., Bellgrove, M., Fornito, A. (2019). Functional connectivity of corticostriatal circuitry and psychosis-like experiences in the general community. Biological Psychiatry, 86: 16-24.
https://www.biologicalpsychiatryjournal.com/article/S0006-3223(19)30119-2/abstract

Arnatkeviciute, A.*, Fulcher, B.*, Pocock, R., Fornito, A. (2018). Hub connectivity, neuronal diversity, and gene expression in the C. elegans connectome. PLoS Computational Biology, 14(2): e1005989.
*authors contributed equally to the work
https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005989

Parkes, L., Fulcher, B., Yücel, M., Fornito, A. (2018). An evaluation of the efficacy, reliability, and sensitivity of motion correction strategies for resting-state functional MRI. NeuroImage, 171: 415-436.
https://www.sciencedirect.com/science/article/pii/S1053811917310972

Fulcher, B. D., Fornito, A. (2016). A transcriptional signature of hub connectivity in the mouse connectome. Proceedings of the National Academy of Sciences, USA, 113(5): 1435-1440.
https://www.pnas.org/content/early/2016/01/14/1513302113

Baker, S. T. E., Lubman, D. I., Yücel, M., Allen, N. B., Whittle, S., Fulcher, B., Zalesky, A., Fornito, A. (2015). Developmental changes in brain network hub connectivity in late adolescence. Journal of Neuroscience, 35: 9078-9087.
https://www.jneurosci.org/content/35/24/9078

Fornito, A., Zalesky, A., Breakspear, M. J. (2015). The connectomics of brain disorders. Nature Reviews Neuroscience, 16: 159-172.
https://www.nature.com/articles/nrn3901

Dwyer, D. B., Harrison, B. J., Yücel, M., Whittle, S., Zalesky, A., Pantelis, C., Allen, N. B., Fornito, A. (2014). Large-scale brain network dynamics supporting adolescent cognitive control. Journal of Neuroscience, 34(42): 14096-14107.
https://www.jneurosci.org/content/34/42/14096

Zalesky, A., Fornito, A., Cocchi, L., Gollo, L. L., Breakspear, M. (2014). Time-resolved functional brain networks: Dynamics of human brain connectivity at rest. Proceedings of the National Academy of Sciences, USA, 111(28): 10341-10346.
https://www.pnas.org/content/111/28/10341

Fornito, A., Harrison, B. J., Goodby, E., Dean, A., Ooi, C., Nathan, P. J., Lennox, B. R., Jones, P., Suckling, J., Bullmore, E. T. (2013). Functional dysconnectivity of cortico-striatal circuitry as a risk phenotype for psychosis. JAMA Psychiatry, 70:1143-1151.
https://jamanetwork.com/journals/jamapsychiatry/fullarticle/1733253

Fornito, A., Zalesky, A., Breakspear, M. (2013). Graph analysis of the human connectome: Promise, progress, and pitfalls. NeuroImage, 80: 426-444.
https://www.sciencedirect.com/science/article/abs/pii/S1053811913004345

Fornito, A., Harrison, B., Zalesky, A., Simons, J. S. (2012). Competitive and cooperative dynamics of large-scale functional brain networks supporting recollection. Proceedings of the National Academy of Sciences, USA, 109(31): 12788-12793.
https://www.pnas.org/content/109/31/12788

Fornito, A., Zalesky, A., Pantelis, C., Bullmore, E. T. (2012). Schizophrenia, neuroimaging and connectomics. NeuroImage, 62: 2296-2314.
https://www.sciencedirect.com/science/article/abs/pii/S1053811912002133

Zalesky, A., Fornito, A., Bullmore, E. (2012). On the use of correlation as a measure of network connectivity. NeuroImage, 60: 2096-2106.
https://www.sciencedirect.com/science/article/abs/pii/S1053811912001784

Fornito, A., Yoon, J., Zalesky, A., Bullmore, E. T., Carter, C. S. (2011). General and specific functional connectivity disturbances in first episode schizophrenia during cognitive control performance. Biological Psychiatry, 70:64-72.
https://www.biologicalpsychiatryjournal.com/article/S0006-3223(11)00171-5/abstract

Fornito, A., Zalesky, A., Bassett, D. S., Meunier, D., Ellison-Wright, I., Yücel, M., Wood, S. J., Shaw, K., O’Connor, J., Nertney, D., Mowry, B. J., Pantelis, C., Bullmore, E. T. (2011). Genetic influences on cost-efficient organization of human cortical functional networks. Journal of Neuroscience, 31(9): 3261-3270.
https://www.jneurosci.org/content/31/9/3261

Zalesky, A., Fornito, A., Bullmore, E. T. (2010). Network-based statistic: Identifying differences in brain networks. NeuroImage, 53: 1197-1207.
https://www.sciencedirect.com/science/article/abs/pii/S1053811910008852

Zalesky, A., Fornito, A., Harding, I. H., Cocchi, L., Yücel, M., Pantelis, C., Bullmore, E. T. (2010). Whole-brain anatomical networks: does the choice of nodes matter? NeuroImage, 50: 970-983.
https://www.sciencedirect.com/science/article/abs/pii/S1053811909013159

Additional publications

A list of NSB preprints can be found here:

A list of NSB Lab publications can be found on PubMed