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Ageing/prune neurons (ZIP file)
Prune neuronal dendritic tree and simulate its dynamics
Kirch, C., & Gollo, L. L. (2021). Single-neuron dynamical effects of dendritic pruning implicated in aging and neurodegeneration: towards a measure of neuronal reserve. Scientific Reports, 11(1), 1309.
Susceptible-infected-refractory-susceptible model with diversity in the excitability parameter.
Gollo LL, Copelli M, & Roberts JA (2016). Diversity improves performance in excitable networks. PeerJ, 4, e1912.
Simulate the dynamics of any of the >100,000 neurons, whose digital reconstructions are available at NeuroMorpho.org.
Kirch, C., & Gollo, L. L. (2020). Spatially resolved dendritic integration: Towards a functional classification of neurons. PeerJ, 8, e10250.
Compare the ranking of nodes between two networks
Kale P, Zalesky A, & Gollo LL (2018). Estimating the impact of structural directionality: How reliable are undirected connectomes?. Network Neuroscience, 2(02), 259-284.
Generate partially-randomized surrogate networks that preserve the effect of distance on the weights.
Gollo LL, Roberts JA, Cropley VL, Di Biase MA, Pantelis C, Zalesky A, Breakspear M (2018). Fragility and volatility of structural hubs in the human connectome. Nature Neuroscience 21:1107-1116.